Search results for "Diversity index"
showing 10 items of 28 documents
Geographical and bathymetric distribution of foraminiferal assemblages from the Alboran Sea (western Mediterranean)
2018
A total of 176 surface sediment samples, recovered in the Alboran Sea by the oceanographic vessel Vizconde de Eza during the 2002 and 2003 campaigns, were analysed for their foraminiferal content. Planktonic and benthic foraminifera were picked up, studied and classified. In addition, a series of diversity indices were calculated. An attempt was made to correlate diversity (Fisher alpha index) with longitude, latitude and depth. Planktonic assemblages are strongly dominated by the species Globorotalia inflata (d’Orbigny) together with Globigerina bulloides d’Orbigny. Correlation analysis show only a weak relation between planktonic foraminiferal diversity and both longitude and distance to …
Intensity of male-male competition predicts morph diversity in a color polymorphic lizard.
2017
Sexual selection is one of the main processes involved in the emergence and maintenance of heritable colour polymorphisms in a variety of taxa. Here we test whether the intensity of sexual selection, estimated from population sex ratio, predicts morph diversity in Podarcis muralis, a colour polymorphic lizard with discrete white, yellow, orange, white-orange, and yellow-orange male and female phenotypes (i.e. morphs). In a sample of 116 Pyrenean populations and 5421 lizards, sex ratios (m/f) vary from 0.29 to 2.5, with the number of morphs for each sex ranging from 2 to 5. Male-biased sex ratios are associated with increased morph diversity as measured with Shannon's diversity index. The ma…
Temporal variability in detritus resource maintains diversity of bacterial communities
2008
Competition theory generally predicts that diversity is maintained by temporal environmental fluctuations. One of the many suggested mechanisms for maintaining diversity in fluctuating environments is the gleaner-opportunist trade-off, whereby gleaner species have low threshold resource levels and low maximum growth rates in high resource concentration while opportunist species show opposite characteristics. We measured the growth rates of eight heterotrophic aquatic bacteria under different concentrations of chemically complex plant detritus resource. The growth rates revealed gleaner-opportunist trade-offs. The role of environmental variability in maintaining diversity was tested in a 28-…
Can the large ecological amplitude of Ambrosia artemisiifolia explain its invasive success in France?
2008
International audience; In order to understand the successful spread of Ambrosia artemisiifolia in France, the variability of colonised habitat by this species was studied at 48 locations, from its central to peripheral area of distribution. Each site was characterised by a vegetation survey, a description of the A. artemisiifolia population and a soil analysis. Differences in the number of species, Shannon diversity index, evenness index and plant life form spectra were compared among the sites. A total of 276 species occurring along with A. artemisiifolia was observed. Therophytes and hemicryptophytes represented more than 80% of all the species. The two most frequent species occurring al…
Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites
2016
The aim of the present study is to deepen the current understanding of the microbial communities at two poplar phytomanagement sites to reveal the environmental factors that drive the abundance, diversity and composition of microbial communities. A soil analysis revealed that the two soils displayed contrasting physico-chemical characteristics, with significant lower pH and higher Cd, Zn and Mn CaCl2-extractable fractions at Leforest site, compared with Pierrelaye site. The fungal and bacterial community profiles in the poplar roots and soils were assessed through Illumina MiSeq sequencing. Diversity indices and β-diversity measures illustrated that the root microbial communities were well …
Exploring the biodiversity of two groups of Oenococcus oeni isolated from grape musts and wines: Are they equally diverse?
2016
One hundred and four Oenococcus oeni isolates were characterised by the carbohydrate fermentation (CH) profile and DNA fingerprinting. Forty-four isolates came from grape must, and 60 from wines sampled at the end of alcoholic fermentation or during malolactic fermentation. The grape must isolates fermented more CH than the wine isolates. In genotypical terms, no clear boundary between grape must and wine isolates was found. Diversities were deduced by considering the isolates of grape must and of wine separately and jointly. By considering only CH fermentation abilities, the group of grape must isolates gave higher diversity index (DICH) values than those isolated from wine; i.e., these is…
Influence of Altered Microbes on Soil Organic Carbon Availability in Karst Agricultural Soils Contaminated by Pb-Zn Tailings.
2018
Soil organic carbon (SOC) availability is determined via a complex bio-mediated process, and Pb-Zn tailings are toxic to the soil microbes that are involved in this process. Here, Pb-Zn-tailings- contaminated karst soils with different levels (paddy field > corn field > citrus field > control group) were collected to explore the intrinsic relationship between Pb-Zn tailings and microbes due to the limited microbial abundance in these soils. The SOC concentration in the paddy fields is the highest. However, based on the soil microbial diversity and sole-carbon-source utilization profiles, the rate of SOC availability, McIntosh index, Shannon-Wiener diversity index, Simpson’s diversi…
Unexpected associated microalgal diversity in the lichen Ramalina farinacea is uncovered by pyrosequencing analyses
2017
The current literature reveals that the intrathalline coexistence of multiple microalgal taxa in lichens is more common than previously thought, and additional complexity is supported by the coexistence of bacteria and basidiomycete yeasts in lichen thalli. This replaces the old paradigm that lichen symbiosis occurs between a fungus and a single photobiont. The lichen Ramalina farinacea has proven to be a suitable model to study the multiplicity of microalgae in lichen thalli due to the constant coexistence of Trebouxia sp. TR9 and T. jamesii in long-distance populations. To date, studies involving phycobiont diversity within entire thalli are based on Sanger sequencing, but this method see…
Mapping and determinism of soil microbial community distribution across an agricultural landscape.
2015
Article en open access; International audience; Despite the relevance of landscape, regarding the spatial patterning of microbial communities and the relative influence of environmental parameters versus human activities, few investigations have been conducted at this scale. Here, we used a systematic grid to characterize the distribution of soil microbial communities at 278 sites across a monitored agricultural landscape of 13km(2). Molecular microbial biomass was estimated by soil DNA recovery and bacterial diversity by 16S rRNA gene pyrosequencing. Geostatistics provided the first maps of microbial community at this scale and revealed a heterogeneous but spatially structured distribution…
The Effect of perturbations on phytoplankton assemblages in a deep reservoir (Vouglans, France)
2003
Disturbances, such as rainfall and hydrological management of Vouglans reservoir, seem to influence the establishment of the ecological system inside this man-made lake. In this paper, the main effect of these disturbances are changes in the z mix :z eu ratio, with a shift in the composition and phytoplankton dynamics, and consequently in the Shannon’s diversity. The seasonal changes found in the surface layers of Vouglans reservoir were typical for mesotrophic and temperate lakes, but some perturbations induced the ‘reversion’ to an earlier stage in the expected successional pattern during the stratification period. This early-state displayed an intensive proliferation of the filamentous u…